Repository to collect and share bed files for each bait set. This repository does not contain any bait information. There is also plan to add annotations for each bed file.

Source code https://github.com/Clinical-Genomics/target_capture_bed
Build status travis_status_badge
Version latest_release
Repository size repo_size
Development model Github Flow
Maintainers Hassan Foroughi, Anna Lyander, Keyvan Elhami

List of current panelsΒΆ

id short name file name designer
CG2.1 lymphomatic_2.1 lymphomatic_2.1_hg19_design.bed Christian Brieghel
CG3.1 gi_cfdna_3.1 gicfdna_3.1_hg19_design.bed Emma Tham
CG4.1 gmck_solid_4.1 gmcksolid_4.1_hg19_design.bed Johan Lindberg
CG5.1 gms_myeloid_5.1 gmsmyeloid_5.1_hg19_design.bed Christina Orsmark Pietras
CG5.2 gms_myeloid_5.2 gmsmyeloid_5.2_hg19_design.bed Christina Orsmark Pietras
CG6.1 lymphoma_6.1 lymphoma_6.1_hg19_design.bed Valtteri Wirta
CG7.1 gms_lymphoid_7.1 gmslymphoid_7.1_hg19_design.bed Christina Orsmark Pietras
CG8.1 exome_8.1 twistexome_8.1_hg19_design.bed Twist Bioscience
CG9.1 exome_refseq_9.1 twistexomerefseq_9.1_hg19_design.bed Twist Bioscience
CG10.1 exome_comp_10.1 twistexomecomprehensive_10.1_hg19_design.bed Twist Bioscience
CG11.1 agilent_sureselect_cre_11.1 agilentsureselectcre_11.1_hg19_design.bed Agilent
CG12.1 agilent_sureselect_v5_12.1 agilentsureselectv5_12.1_hg19_design.bed Agilent
CG13.1 agilent_sureselect_v1_13.1 agilentsureselectv1_13.1_hg19_design.bed Agilent