Filename convention¶

{project_name}_{project_number.version}_{genome_version}_{application/purpose}.{file_extension}

example1: GMCKsolid_4.1_hg19_design.bed

example2: GMCKsolid_4.1_hg38_design.bed

example3: TwistExome_8.1_hg19_design.bed

example4: TwistExomeRefSeq_9.1_hg19_design.bed

project_name¶

Name will reflect company or project name for the bed. Examples: GMCKsolid or TwistExomeRefSeq

Integer starting from 1 and new projects will get a new number.

Any change to regions or features in the original design file.

hg19, hg38

target: original target file that was sent to Twist
design: all_target_segments_covered_by_probes file received from Twist
dropout: all_target_segments_not_covered_by_probes file received from Twist
ucsctrack: file is suitable to upload to ucsc as track file. Same file as target but with a header suitable to upload to UCSC genome browser